Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00025.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3394
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.24


Found at i:17 original size:12 final size:12

Alignment explanation


    Indices: 1--30  Score: 51
    Period size: 12  Copynumber: 2.5  Consensus size: 12

                        
          1 ACAAGAAGAAGA
          1 ACAAGAAGAAGA

                        
         13 ACAAGAAGAAGA
          1 ACAAGAAGAAGA

             *    
         25 ATAAGA
          1 ACAAGA

         31 GTGGAAGGAC


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.67, C:0.07, G:0.23, T:0.03


Consensus pattern (12 bp):   
ACAAGAAGAAGA
Done.