Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00039.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3555
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31


Found at i:1895 original size:31 final size:31

Alignment explanation


    Indices: 1819--1908  Score: 92
    Period size: 31  Copynumber: 2.9  Consensus size: 31

       1809 ATTTAGGGTT

                        * *                
       1819 TGAACTTGGCAACTATTCCCACATTGGGACC
          1 TGAACTTGGCAATTGTTCCCACATTGGGACC

                    **           *          
       1850 TGAACTTGATAATTGTTCCCATATTGTGG-CC
          1 TGAACTTGGCAATTGTTCCCACATTG-GGACC

                  *           **        
       1881 TGAACTAGGCAATTGTTCTTACATTGGG
          1 TGAACTTGGCAATTGTTCCCACATTGGG

       1909 GCTTAAACTT


Statistics
Matches: 47,  Mismatches: 11, Indels: 3
        0.77            0.18        0.05

Matches are distributed among these distances:
  30    2  0.04
  31   43  0.91
  32    2  0.04

ACGTcount: A:0.24, C:0.21, G:0.21, T:0.33


Consensus pattern (31 bp):   
TGAACTTGGCAATTGTTCCCACATTGGGACC
Done.