Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00056.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3085
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28


Found at i:607 original size:3 final size:3

Alignment explanation


    Indices: 601--630  Score: 60
    Period size: 3  Copynumber: 10.0  Consensus size: 3

        591 ACCACCTTCA

                                                   
        601 CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT
          1 CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT

        631 GAGGAACAAT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   27  1.00

ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33


Consensus pattern (3 bp):   
CCT

Found at i:741 original size:39 final size:39

Alignment explanation


    Indices: 698--777  Score: 126
    Period size: 39  Copynumber: 2.1  Consensus size: 39

        688 TCATCGTCAC

                                                    
        698 CATCACCGCCACCTCCTAAG-AAACAATCATCACCACCTT
          1 CATCACCGCCACCTCCTAAGCAAA-AATCATCACCACCTT

                   *  *                            
        737 CATCACCTCCTCCTCCTAAGCAAAAATCATCACCACCTT
          1 CATCACCGCCACCTCCTAAGCAAAAATCATCACCACCTT

              
        776 CA
          1 CA

        778 GATAGCTCTT


Statistics
Matches: 38,  Mismatches: 2, Indels: 2
        0.90            0.05        0.05

Matches are distributed among these distances:
  39   35  0.92
  40    3  0.08

ACGTcount: A:0.33, C:0.44, G:0.04, T:0.20


Consensus pattern (39 bp):   
CATCACCGCCACCTCCTAAGCAAAAATCATCACCACCTT
Done.