Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00059.R1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2590
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.30


Found at i:2204 original size:24 final size:24

Alignment explanation


    Indices: 2177--2226  Score: 82
    Period size: 24  Copynumber: 2.1  Consensus size: 24

       2167 CTTACTAATC

                          *     *   
       2177 GAACAATTCCAAACTACAACTGAG
          1 GAACAATTCCAAACCACAACCGAG

                                    
       2201 GAACAATTCCAAACCACAACCGAG
          1 GAACAATTCCAAACCACAACCGAG

              
       2225 GA
          1 GA

       2227 TACGGGTGGT


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.46, C:0.28, G:0.14, T:0.12


Consensus pattern (24 bp):   
GAACAATTCCAAACCACAACCGAG
Done.