Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00073.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3613
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.30


Found at i:1751 original size:39 final size:39

Alignment explanation


    Indices: 1697--1776  Score: 151
    Period size: 39  Copynumber: 2.1  Consensus size: 39

       1687 ACTTCCTTAT

                                *                  
       1697 CCGTGAAAACTATATAAAATCTCGATTTTTCTAGTTAAG
          1 CCGTGAAAACTATATAAAATATCGATTTTTCTAGTTAAG

                                                   
       1736 CCGTGAAAACTATATAAAATATCGATTTTTCTAGTTAAG
          1 CCGTGAAAACTATATAAAATATCGATTTTTCTAGTTAAG

              
       1775 CC
          1 CC

       1777 AAATTTCATG


Statistics
Matches: 40,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  39   40  1.00

ACGTcount: A:0.36, C:0.16, G:0.12, T:0.35


Consensus pattern (39 bp):   
CCGTGAAAACTATATAAAATATCGATTTTTCTAGTTAAG
Done.