Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00079.R1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2215
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32


Found at i:1433 original size:13 final size:13

Alignment explanation


    Indices: 1415--1444  Score: 60
    Period size: 13  Copynumber: 2.3  Consensus size: 13

       1405 GTGTAGTTGA

                         
       1415 GATATTTTAGATG
          1 GATATTTTAGATG

                         
       1428 GATATTTTAGATG
          1 GATATTTTAGATG

                
       1441 GATA
          1 GATA

       1445 AACTTTTTTA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   17  1.00

ACGTcount: A:0.33, C:0.00, G:0.23, T:0.43


Consensus pattern (13 bp):   
GATATTTTAGATG
Done.