Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00082.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1906
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36


Found at i:1173 original size:89 final size:89

Alignment explanation


    Indices: 993--1259  Score: 410
    Period size: 89  Copynumber: 3.0  Consensus size: 89

        983 TTCTATGCTT

                    *        *      *   **            *                      
        993 TGCCTCATACGATCTTCGACATGTTGAGGCGTATGCCATTGCAATATG-TTTATCATTTGATCAT
          1 TGCCTCATGCGATCTTCTACATGTCGAGATGTATGCCATTGCCATATGTTTTATCATTTGATCAT

                                    
       1057 GTTTTGTCTAGGTCGATGTGGCTC
         66 GTTTTGTCTAGGTCGATGTGGCTC

                                                                   *         
       1081 TGCCTCATGCGATCTTCTACATGTCGAGATGTATGCCATTGCCATATGTTTTATCGTTTGATCAT
          1 TGCCTCATGCGATCTTCTACATGTCGAGATGTATGCCATTGCCATATGTTTTATCATTTGATCAT

                         *          
       1146 GTTTTGTCTAGGTTGATGTGGCTC
         66 GTTTTGTCTAGGTCGATGTGGCTC

                                                                             
       1170 TGCCTCATGCGATCTTCTACATGTCGAGATGTATGCCATTGCCATATGTTTTATCATTTGATCAT
          1 TGCCTCATGCGATCTTCTACATGTCGAGATGTATGCCATTGCCATATGTTTTATCATTTGATCAT

              *      *    * *        
       1235 GTCTTGTTCCAGGTGGTTGTGGCTC
         66 GTTTTG-TCTAGGTCGATGTGGCTC

       1260 CGGTTTTGCT


Statistics
Matches: 164,  Mismatches: 13, Indels: 2
        0.92            0.07        0.01

Matches are distributed among these distances:
  88   42  0.26
  89  107  0.65
  90   15  0.09

ACGTcount: A:0.18, C:0.20, G:0.22, T:0.40


Consensus pattern (89 bp):   
TGCCTCATGCGATCTTCTACATGTCGAGATGTATGCCATTGCCATATGTTTTATCATTTGATCAT
GTTTTGTCTAGGTCGATGTGGCTC
Done.