Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00742.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 367

Length: 613
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.34


Found at i:130 original size:26 final size:26

Alignment explanation


    Indices: 91--200  Score: 193
    Period size: 26  Copynumber: 4.2  Consensus size: 26

         81 TGATACAAAT

                   *               *  
         91 TGATAATAGGTTAGGTAAATGTTCCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                     *                
        117 TGATAATGGATTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                                      
        143 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                                      
        169 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                  
        195 TGATAA
          1 TGATAA

        201 GAATATCATG


Statistics
Matches: 80,  Mismatches: 4, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  26   80  1.00

ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37


Consensus pattern (26 bp):   
TGATAATGGGTTAGGTAAATGTTTCA

Done.