Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00120.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 661

Length: 1102
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.32


Found at i:318 original size:26 final size:26

Alignment explanation


    Indices: 282--339  Score: 116
    Period size: 26  Copynumber: 2.2  Consensus size: 26

        272 TGATACAAAT

                                      
        282 TGATAATAGGTTAGGTAAATGTTTCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

                                      
        308 TGATAATAGGTTAGGTAAATGTTTCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

                  
        334 TGATAA
          1 TGATAA

        340 GAATTTCATA


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   32  1.00

ACGTcount: A:0.36, C:0.03, G:0.22, T:0.38


Consensus pattern (26 bp):   
TGATAATAGGTTAGGTAAATGTTTCA
Done.