Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga04g00129.N1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 555
Length: 926
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Found at i:756 original size:136 final size:138
Alignment explanation
Indices: 510--785 Score: 502
Period size: 136 Copynumber: 2.0 Consensus size: 138
500 GAGTAGTCTC
510 CCCAAATGGGCTTGCATATGCTTACTGATGTTGCATGTATTTTGCAAATGGGCCTATGGGCCATA
1 CCCAAATGGGCTTGCATATGCTTACTGATGTTGCATGTATTTTGCAAATGGGCCTATGGGCCATA
* *
575 CTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTGGCCCAGTAT
66 CTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTAC
*
640 CACTGTTA
131 CACTATTA
*
648 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTG-AAATGGGCCTATGGGCCATA
1 CCCAAATGGGCTTGCATATGCTTACTGATGTTGCATGTATTTTGCAAATGGGCCTATGGGCCATA
711 CTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTAC
66 CTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTAC
776 CACTATTA
131 CACTATTA
784 CC
1 CC
786 TGAATAGGCT
Statistics
Matches: 134, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
136 92 0.69
137 22 0.16
138 20 0.15
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (138 bp):
CCCAAATGGGCTTGCATATGCTTACTGATGTTGCATGTATTTTGCAAATGGGCCTATGGGCCATA
CTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTAC
CACTATTA
Done.