Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00132.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 638

Length: 1064
ACGTcount: A:0.36, C:0.10, G:0.22, T:0.32


Found at i:173 original size:26 final size:26

Alignment explanation


    Indices: 133--268  Score: 218
    Period size: 26  Copynumber: 5.2  Consensus size: 26

        123 TGATACAAAT

                   *  *            *  
        133 TGATAATAGGCTAGGTAAATGTTCCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                                      
        159 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                   *            *  *  
        185 TGATAATAGGTTAGGTAAATATTCCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                                      
        211 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                                      
        237 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                  
        263 TGATAA
          1 TGATAA

        269 GAATATCATG


Statistics
Matches: 101,  Mismatches: 9, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  26  101  1.00

ACGTcount: A:0.34, C:0.06, G:0.24, T:0.36


Consensus pattern (26 bp):   
TGATAATGGGTTAGGTAAATGTTTCA

Done.