Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00133.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1988
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34


Found at i:1834 original size:13 final size:13

Alignment explanation


    Indices: 1816--1864  Score: 53
    Period size: 13  Copynumber: 3.8  Consensus size: 13

       1806 TTTGGTAATT

                         
       1816 CTTTTGAAAAGTG
          1 CTTTTGAAAAGTG

                   *     
       1829 CTTTTGATAAGTG
          1 CTTTTGAAAAGTG

              * *  *     
       1842 CTGTGGAGAAGTG
          1 CTTTTGAAAAGTG

            *         
       1855 TTTTTGAAAA
          1 CTTTTGAAAA

       1865 ATTTAGTTTA


Statistics
Matches: 28,  Mismatches: 8, Indels: 0
        0.78            0.22        0.00

Matches are distributed among these distances:
  13   28  1.00

ACGTcount: A:0.29, C:0.06, G:0.27, T:0.39


Consensus pattern (13 bp):   
CTTTTGAAAAGTG
Done.