Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00142.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2053
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.30


Found at i:29 original size:8 final size:8

Alignment explanation


    Indices: 16--42  Score: 54
    Period size: 8  Copynumber: 3.4  Consensus size: 8

          6 CCTTCTGTCA

                    
         16 TCTCTTTT
          1 TCTCTTTT

                    
         24 TCTCTTTT
          1 TCTCTTTT

                    
         32 TCTCTTTT
          1 TCTCTTTT

               
         40 TCT
          1 TCT

         43 TTTACTCCAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   19  1.00

ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74


Consensus pattern (8 bp):   
TCTCTTTT
Done.