Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00144.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2073
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32


Found at i:137 original size:6 final size:6

Alignment explanation


    Indices: 122--155  Score: 61
    Period size: 6  Copynumber: 5.8  Consensus size: 6

        112 ACGTTGACTT

                                                    
        122 CCTC-C CCTCTC CCTCTC CCTCTC CCTCTC CCTCT
          1 CCTCTC CCTCTC CCTCTC CCTCTC CCTCTC CCTCT

        156 TTCTGTCTTA


Statistics
Matches: 28,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
   5    4  0.14
   6   24  0.86

ACGTcount: A:0.00, C:0.68, G:0.00, T:0.32


Consensus pattern (6 bp):   
CCTCTC

Done.