Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00159.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3404
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33


Found at i:3156 original size:14 final size:15

Alignment explanation


    Indices: 3123--3161  Score: 53
    Period size: 15  Copynumber: 2.7  Consensus size: 15

       3113 TTTCCTTCAT

                           
       3123 TAAGTTTTTATTACA
          1 TAAGTTTTTATTACA

            *        *     
       3138 CAAGTTTTTCTTA-A
          1 TAAGTTTTTATTACA

                      
       3152 TAAGTTTTTA
          1 TAAGTTTTTA

       3162 ATTTCGTTGA


Statistics
Matches: 20,  Mismatches: 4, Indels: 1
        0.80            0.16        0.04

Matches are distributed among these distances:
  14    9  0.45
  15   11  0.55

ACGTcount: A:0.31, C:0.08, G:0.08, T:0.54


Consensus pattern (15 bp):   
TAAGTTTTTATTACA
Done.