Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00165.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2951
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30


Found at i:1318 original size:12 final size:12

Alignment explanation


    Indices: 1288--1326  Score: 60
    Period size: 12  Copynumber: 3.2  Consensus size: 12

       1278 AAGATGGTGT

                  *     
       1288 TGATGAGGAAGA
          1 TGATGATGAAGA

                        
       1300 TGATGATGAAGA
          1 TGATGATGAAGA

                    *   
       1312 TGATGATGCAGA
          1 TGATGATGAAGA

               
       1324 TGA
          1 TGA

       1327 GAGTGAGGGA


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  12   25  1.00

ACGTcount: A:0.38, C:0.03, G:0.36, T:0.23


Consensus pattern (12 bp):   
TGATGATGAAGA
Done.