Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: Ga04g00171.F1
Parameters: 2 7 7 80 10 50 1000
Length: 1411
Tables: 1
This is table 1 of 1 ( 13 repeats found )
Click on indices to view alignment
Table Explanation
| Indices | Period Size | Copy Number | Consensus Size | Percent Matches | Percent Indels | Score | A | C | G | T | Entropy (0-2) |
| 262--342 | 33 | 2.5 | 33 | 85 | 0 | 99 | 33 | 25 | 18 | 22 | 1.97 |
| 310--458 | 51 | 2.9 | 51 | 83 | 0 | 190 | 28 | 25 | 20 | 24 | 1.99 |
| 353--425 | 18 | 4.2 | 18 | 68 | 10 | 53 | 31 | 23 | 19 | 26 | 1.98 |
| 544--878 | 33 | 10.2 | 33 | 80 | 3 | 248 | 31 | 26 | 19 | 22 | 1.98 |
| 493--710 | 99 | 2.2 | 99 | 86 | 0 | 292 | 32 | 26 | 18 | 22 | 1.97 |
| 583--647 | 18 | 3.8 | 17 | 76 | 12 | 62 | 35 | 27 | 13 | 23 | 1.93 |
| 656--713 | 18 | 3.4 | 18 | 72 | 13 | 68 | 25 | 24 | 24 | 25 | 2.00 |
| 722--767 | 15 | 2.7 | 18 | 74 | 19 | 53 | 28 | 36 | 17 | 17 | 1.92 |
| 524--879 | 132 | 2.7 | 132 | 83 | 1 | 464 | 32 | 26 | 19 | 22 | 1.97 |
| 817--914 | 51 | 1.9 | 51 | 85 | 4 | 135 | 34 | 25 | 19 | 20 | 1.96 |
| 868--1118 | 33 | 7.6 | 33 | 73 | 3 | 191 | 37 | 26 | 15 | 20 | 1.92 |
| 518--914 | 132 | 3.0 | 128 | 79 | 6 | 425 | 32 | 26 | 19 | 21 | 1.97 |
| 926--1115 | 99 | 1.9 | 99 | 84 | 2 | 256 | 38 | 26 | 13 | 21 | 1.91 |
Tables: 1
The End!