Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00184.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 769

Length: 1282
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29


Found at i:316 original size:15 final size:15

Alignment explanation


    Indices: 293--327  Score: 52
    Period size: 15  Copynumber: 2.3  Consensus size: 15

        283 AAGCAGTTAC

                *          
        293 ATCGCCGACTCCGGG
          1 ATCGGCGACTCCGGG

                       *   
        308 ATCGGCGACTCGGGG
          1 ATCGGCGACTCCGGG

                 
        323 ATCGG
          1 ATCGG

        328 TCGGTCGCTT


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  15   18  1.00

ACGTcount: A:0.14, C:0.31, G:0.40, T:0.14


Consensus pattern (15 bp):   
ATCGGCGACTCCGGG
Done.