Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00193.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2358
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30


Found at i:2310 original size:12 final size:12

Alignment explanation


    Indices: 2293--2317  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       2283 GAGATTTTAA

                        
       2293 TTTTGTTCTTGT
          1 TTTTGTTCTTGT

                        
       2305 TTTTGTTCTTGT
          1 TTTTGTTCTTGT

             
       2317 T
          1 T

       2318 ATGGTTTTCC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.00, C:0.08, G:0.16, T:0.76


Consensus pattern (12 bp):   
TTTTGTTCTTGT
Done.