Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00067.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2608
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:1551 original size:4 final size:4

Alignment explanation


    Indices: 1542--1618  Score: 57
    Period size: 4  Copynumber: 19.0  Consensus size: 4

       1532 TGCATAGGAT

                                           * *        **             * *
       1542 TGTA TGTA TGTA TGTA TGTA TGTA TTTT TGGTA -AAA TGTA TGTA TATG
          1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA T-GTA TGTA TGTA TGTA TGTA

                              *    *           
       1590 TGTTA TGTA TGTA TGCA TGCA TGTA TGTA
          1 TG-TA TGTA TGTA TGTA TGTA TGTA TGTA

       1619 CATAAGAGGA


Statistics
Matches: 56,  Mismatches: 14, Indels: 6
        0.74            0.18        0.08

Matches are distributed among these distances:
   3    1  0.02
   4   51  0.91
   5    4  0.07

ACGTcount: A:0.26, C:0.03, G:0.23, T:0.48


Consensus pattern (4 bp):   
TGTA

Done.