Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00212.R1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3023
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.30


Found at i:2189 original size:25 final size:25

Alignment explanation


    Indices: 2155--2206  Score: 95
    Period size: 25  Copynumber: 2.1  Consensus size: 25

       2145 CTATGATAAA

                                     
       2155 TCATATTACTTGGGACACAAACATG
          1 TCATATTACTTGGGACACAAACATG

                                 *   
       2180 TCATATTACTTGGGACACAAATATG
          1 TCATATTACTTGGGACACAAACATG

              
       2205 TC
          1 TC

       2207 TGAACCATTT


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   26  1.00

ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31


Consensus pattern (25 bp):   
TCATATTACTTGGGACACAAACATG
Done.