Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00214.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9364
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28


Found at i:710 original size:17 final size:15

Alignment explanation


    Indices: 668--719  Score: 68
    Period size: 15  Copynumber: 3.3  Consensus size: 15

        658 CAAGGTTAAC

                *      *   
        668 AACTAACTAACAGCT
          1 AACTGACTAACTGCT

                           
        683 AACTGACTAACTGCT
          1 AACTGACTAACTGCT

                             
        698 AACTGATACTAACTGCT
          1 AACTG--ACTAACTGCT

                 
        715 AACTG
          1 AACTG

        720 CAGTAACTGT


Statistics
Matches: 33,  Mismatches: 2, Indels: 2
        0.89            0.05        0.05

Matches are distributed among these distances:
  15   18  0.55
  17   15  0.45

ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25


Consensus pattern (15 bp):   
AACTGACTAACTGCT
Done.