Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00217.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 507

Length: 845
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.23


Found at i:463 original size:42 final size:42

Alignment explanation


    Indices: 388--509  Score: 199
    Period size: 42  Copynumber: 2.8  Consensus size: 42

        378 CGCCATTGTC

                 *                   *                   
        388 GAGGCGCCAAAGAAAGTGGAAGAAGCCATTGTTGAGGCTCCAAAG
          1 GAGGCCCCAAAGAAA---GAAGAAGTCATTGTTGAGGCTCCAAAG

                                                      
        433 GAGGCCCCAAAGAAAGAAGAAGTCATTGTTGAGGCTCCAAAG
          1 GAGGCCCCAAAGAAAGAAGAAGTCATTGTTGAGGCTCCAAAG

                                               
        475 GAGGCCCCAAAGAAAGAAGAAGTCATTGTTGAGGC
          1 GAGGCCCCAAAGAAAGAAGAAGTCATTGTTGAGGC

        510 AAAAACAATG


Statistics
Matches: 75,  Mismatches: 2, Indels: 3
        0.94            0.03        0.04

Matches are distributed among these distances:
  42   61  0.81
  45   14  0.19

ACGTcount: A:0.37, C:0.18, G:0.31, T:0.14


Consensus pattern (42 bp):   
GAGGCCCCAAAGAAAGAAGAAGTCATTGTTGAGGCTCCAAAG
Done.