Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00218.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3546
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32


Found at i:1520 original size:9 final size:9

Alignment explanation


    Indices: 1506--1530  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

       1496 CTGTTGTGAG

                     
       1506 CTGTGTTTT
          1 CTGTGTTTT

                     
       1515 CTGTGTTTT
          1 CTGTGTTTT

                   
       1524 CTGTGTT
          1 CTGTGTT

       1531 ACCTGTATGT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.00, C:0.12, G:0.24, T:0.64


Consensus pattern (9 bp):   
CTGTGTTTT
Done.