Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00221.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3275
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.32


Found at i:61 original size:15 final size:15

Alignment explanation


    Indices: 41--70  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

         31 CCCCTCTAAA

                           
         41 GGCTTGGATTCACCC
          1 GGCTTGGATTCACCC

                           
         56 GGCTTGGATTCACCC
          1 GGCTTGGATTCACCC

         71 TTTGTTTAGC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.13, C:0.33, G:0.27, T:0.27


Consensus pattern (15 bp):   
GGCTTGGATTCACCC
Done.