Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00231.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 466

Length: 778
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27


Found at i:615 original size:12 final size:12

Alignment explanation


    Indices: 598--624  Score: 54
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        588 ACGTGCAGTT

                        
        598 GAAACTGTCATC
          1 GAAACTGTCATC

                        
        610 GAAACTGTCATC
          1 GAAACTGTCATC

               
        622 GAA
          1 GAA

        625 GCTTATCCTT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   15  1.00

ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22


Consensus pattern (12 bp):   
GAAACTGTCATC
Done.