Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00248.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 369

Length: 615
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36


Found at i:455 original size:13 final size:13

Alignment explanation


    Indices: 439--464  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

        429 CCATTTCTCC

                         
        439 TTTTTATTTTTTT
          1 TTTTTATTTTTTT

                         
        452 TTTTTATTTTTTT
          1 TTTTTATTTTTTT

        465 CTTCCTTCTA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92


Consensus pattern (13 bp):   
TTTTTATTTTTTT
Done.