Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00255.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 438

Length: 731
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.23


Found at i:90 original size:30 final size:30

Alignment explanation


    Indices: 54--130  Score: 118
    Period size: 30  Copynumber: 2.6  Consensus size: 30

         44 TGATTTGAGA

                             *            
         54 GACGAACACGGCAACCCTATTCAACTCACC
          1 GACGAACACGGCAACCCGATTCAACTCACC

                              *          *
         84 GACGAACACGGCAACCCGGTTCAACTCACT
          1 GACGAACACGGCAACCCGATTCAACTCACC

                       *     
        114 GACGAACACGGTAACCC
          1 GACGAACACGGCAACCC

        131 CATTTATGTC


Statistics
Matches: 43,  Mismatches: 4, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  30   43  1.00

ACGTcount: A:0.32, C:0.38, G:0.18, T:0.12


Consensus pattern (30 bp):   
GACGAACACGGCAACCCGATTCAACTCACC

Found at i:331 original size:6 final size:6

Alignment explanation


    Indices: 320--355  Score: 63
    Period size: 6  Copynumber: 6.0  Consensus size: 6

        310 AACGCTCCAG

                                               *     
        320 CAGCTC CAGCTC CAGCTC CAGCTC CAGCTC TAGCTC
          1 CAGCTC CAGCTC CAGCTC CAGCTC CAGCTC CAGCTC

        356 GTCGGAGGAT


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   6   29  1.00

ACGTcount: A:0.17, C:0.47, G:0.17, T:0.19


Consensus pattern (6 bp):   
CAGCTC

Done.