Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00261.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2733
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32


Found at i:347 original size:6 final size:6

Alignment explanation


    Indices: 338--364  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

        328 GGGTGGCCGG

                                           
        338 GGCCTC GGCCTC GGCCTC GGCCTC GGC
          1 GGCCTC GGCCTC GGCCTC GGCCTC GGC

        365 GGGTTTTGCT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.00, C:0.48, G:0.37, T:0.15


Consensus pattern (6 bp):   
GGCCTC

Done.