Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00282.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5444
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:5334 original size:15 final size:16

Alignment explanation


    Indices: 5314--5348  Score: 54
    Period size: 15  Copynumber: 2.2  Consensus size: 16

       5304 CATGGGATTT

                            
       5314 TGTAATATTT-TTATC
          1 TGTAATATTTGTTATC

                  *         
       5329 TGTAATTTTTGTTATC
          1 TGTAATATTTGTTATC

                
       5345 TGTA
          1 TGTA

       5349 TTTGTATGCC


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  15    9  0.50
  16    9  0.50

ACGTcount: A:0.23, C:0.06, G:0.11, T:0.60


Consensus pattern (16 bp):   
TGTAATATTTGTTATC

Done.