Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00289.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 879

Length: 1465
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:66 original size:13 final size:14

Alignment explanation


    Indices: 42--71  Score: 60
    Period size: 14  Copynumber: 2.1  Consensus size: 14

         32 GTTCCCAGAA

                          
         42 TTTTTAGTTTTTTT
          1 TTTTTAGTTTTTTT

                          
         56 TTTTTAGTTTTTTT
          1 TTTTTAGTTTTTTT

              
         70 TT
          1 TT

         72 GTTTCAGATG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.07, C:0.00, G:0.07, T:0.87


Consensus pattern (14 bp):   
TTTTTAGTTTTTTT
Done.