Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00294.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1882
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31


Found at i:1612 original size:15 final size:17

Alignment explanation


    Indices: 1572--1615  Score: 58
    Period size: 16  Copynumber: 2.8  Consensus size: 17

       1562 TAGTTTAGGA

                   *         
       1572 TCATTTTAAG-TTGAAC
          1 TCATTTTGAGTTTGAAC

                             
       1588 TCATTTTGAGTTTGAAC
          1 TCATTTTGAGTTTGAAC

                         
       1605 -CA-TTTGAGTTT
          1 TCATTTTGAGTTT

       1616 TCAAATCGAG


Statistics
Matches: 26,  Mismatches: 1, Indels: 3
        0.87            0.03        0.10

Matches are distributed among these distances:
  15    9  0.35
  16   11  0.42
  17    6  0.23

ACGTcount: A:0.25, C:0.11, G:0.16, T:0.48


Consensus pattern (17 bp):   
TCATTTTGAGTTTGAAC
Done.