Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00068.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2298
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:728 original size:4 final size:4

Alignment explanation


    Indices: 719--773  Score: 101
    Period size: 4  Copynumber: 13.8  Consensus size: 4

        709 TTCCTCTTTT

                                                          *            
        719 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ACAC ATAC ATAC
          1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC

                    
        767 ATAC ATA
          1 ATAC ATA

        774 AGCATCATCA


Statistics
Matches: 49,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   4   49  1.00

ACGTcount: A:0.51, C:0.25, G:0.00, T:0.24


Consensus pattern (4 bp):   
ATAC

Found at i:859 original size:2 final size:2

Alignment explanation


    Indices: 854--892  Score: 51
    Period size: 2  Copynumber: 19.5  Consensus size: 2

        844 GGGGTTATGA

                                  *     *     *                       
        854 AT AT AT AT AT AT AT AC AT AC AT AC AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

        893 GCAGGTTAGT


Statistics
Matches: 31,  Mismatches: 6, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41


Consensus pattern (2 bp):   
AT

Done.