Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00308.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 786

Length: 1311
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31


Found at i:125 original size:6 final size:6

Alignment explanation


    Indices: 97--138  Score: 50
    Period size: 6  Copynumber: 6.8  Consensus size: 6

         87 AGTGTAAAAC

                        *                                    
         97 AACAAG AAC-AT AACAATG CAACAAG AACAAG AACAAG AACAA
          1 AACAAG AACAAG AACAA-G -AACAAG AACAAG AACAAG AACAA

        139 AGCCAGCCTT


Statistics
Matches: 31,  Mismatches: 2, Indels: 6
        0.79            0.05        0.15

Matches are distributed among these distances:
   5    4  0.13
   6   21  0.68
   7    1  0.03
   8    5  0.16

ACGTcount: A:0.64, C:0.19, G:0.12, T:0.05


Consensus pattern (6 bp):   
AACAAG
Done.