Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00332.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4463
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32


Found at i:4203 original size:17 final size:17

Alignment explanation


    Indices: 4181--4225  Score: 54
    Period size: 17  Copynumber: 2.6  Consensus size: 17

       4171 GTTTTATAAA

                       *     
       4181 TTTATATTTATGTTGAG
          1 TTTATATTTATATTGAG

                  *   *   *  
       4198 TTTATAATTAAATTTAG
          1 TTTATATTTATATTGAG

                       
       4215 TTTATATTTAT
          1 TTTATATTTAT

       4226 TTTTTTAGGT


Statistics
Matches: 22,  Mismatches: 6, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
  17   22  1.00

ACGTcount: A:0.31, C:0.00, G:0.09, T:0.60


Consensus pattern (17 bp):   
TTTATATTTATATTGAG
Done.