Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00340.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 781

Length: 1303
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.32


Found at i:236 original size:42 final size:42

Alignment explanation


    Indices: 177--261  Score: 170
    Period size: 42  Copynumber: 2.0  Consensus size: 42

        167 TCTATTCTCG

                                                      
        177 AACCAGACCCACTTCCATTTCGTCCCCTTCTTCGAGGTACAT
          1 AACCAGACCCACTTCCATTTCGTCCCCTTCTTCGAGGTACAT

                                                      
        219 AACCAGACCCACTTCCATTTCGTCCCCTTCTTCGAGGTACAT
          1 AACCAGACCCACTTCCATTTCGTCCCCTTCTTCGAGGTACAT

             
        261 A
          1 A

        262 CATGTTTTTA


Statistics
Matches: 43,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  42   43  1.00

ACGTcount: A:0.22, C:0.38, G:0.12, T:0.28


Consensus pattern (42 bp):   
AACCAGACCCACTTCCATTTCGTCCCCTTCTTCGAGGTACAT
Done.