Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00346.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 963

Length: 1605
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31


Found at i:311 original size:42 final size:42

Alignment explanation


    Indices: 252--344  Score: 134
    Period size: 42  Copynumber: 2.2  Consensus size: 42

        242 TGGTTTCTCG

                      *                    *    *   *  
        252 TGCTCCTCCTTCTGTCGGT-CGTGATGGCCCGAATACCTTGGT
          1 TGCTCCTCCTCCTGTCGGTGC-TGATGGCCCAAATAACTTCGT

                                                      
        294 TGCTCCTCCTCCTGTCGGTGCTGATGGCCCAAATAACTTCGT
          1 TGCTCCTCCTCCTGTCGGTGCTGATGGCCCAAATAACTTCGT

                     
        336 TGCTCCTCC
          1 TGCTCCTCC

        345 CCCTCCAGCT


Statistics
Matches: 46,  Mismatches: 4, Indels: 2
        0.88            0.08        0.04

Matches are distributed among these distances:
  42   45  0.98
  43    1  0.02

ACGTcount: A:0.11, C:0.34, G:0.23, T:0.32


Consensus pattern (42 bp):   
TGCTCCTCCTCCTGTCGGTGCTGATGGCCCAAATAACTTCGT

Done.