Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00347.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 618

Length: 1031
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28


Found at i:908 original size:6 final size:7

Alignment explanation


    Indices: 891--915  Score: 50
    Period size: 7  Copynumber: 3.6  Consensus size: 7

        881 CCAAATTTAC

                   
        891 AAAAAAT
          1 AAAAAAT

                   
        898 AAAAAAT
          1 AAAAAAT

                   
        905 AAAAAAT
          1 AAAAAAT

                
        912 AAAA
          1 AAAA

        916 GAAGATTGAA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   18  1.00

ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12


Consensus pattern (7 bp):   
AAAAAAT
Done.