Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00358.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1865
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34


Found at i:296 original size:5 final size:5

Alignment explanation


    Indices: 253--279  Score: 54
    Period size: 5  Copynumber: 5.4  Consensus size: 5

        243 GCTGATTGGT

                                            
        253 AGAAA AGAAA AGAAA AGAAA AGAAA AG
          1 AGAAA AGAAA AGAAA AGAAA AGAAA AG

        280 CTTAAGAAAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   22  1.00

ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00


Consensus pattern (5 bp):   
AGAAA
Done.