Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00367.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 544

Length: 907
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33


Found at i:483 original size:43 final size:43

Alignment explanation


    Indices: 435--522  Score: 167
    Period size: 43  Copynumber: 2.0  Consensus size: 43

        425 ACTTTCTCTC

                                      *                
        435 GTGGTAATTTTTATCCAAGACACTTTCACTTTCAACAAAATTG
          1 GTGGTAATTTTTATCCAAGACACTTTAACTTTCAACAAAATTG

                                                       
        478 GTGGTAATTTTTATCCAAGACACTTTAACTTTCAACAAAATTG
          1 GTGGTAATTTTTATCCAAGACACTTTAACTTTCAACAAAATTG

              
        521 GT
          1 GT

        523 ATTAAAGACG


Statistics
Matches: 44,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  43   44  1.00

ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38


Consensus pattern (43 bp):   
GTGGTAATTTTTATCCAAGACACTTTAACTTTCAACAAAATTG
Done.