Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00375.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4573
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.31


Found at i:2324 original size:18 final size:18

Alignment explanation


    Indices: 2301--2335  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       2291 ATTCCATTCG

                   *  *       
       2301 AAACTCTGACTCTGTTGA
          1 AAACTCTAACCCTGTTGA

                             
       2319 AAACTCTAACCCTGTTG
          1 AAACTCTAACCCTGTTG

       2336 GACAAGTTTC


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31


Consensus pattern (18 bp):   
AAACTCTAACCCTGTTGA

Found at i:4187 original size:36 final size:36

Alignment explanation


    Indices: 4140--4211  Score: 144
    Period size: 36  Copynumber: 2.0  Consensus size: 36

       4130 TAGAGTCAAG

                                                
       4140 GTCGAGCTATTAATTGAGCCAAATTCAAGTTTAGTC
          1 GTCGAGCTATTAATTGAGCCAAATTCAAGTTTAGTC

                                                
       4176 GTCGAGCTATTAATTGAGCCAAATTCAAGTTTAGTC
          1 GTCGAGCTATTAATTGAGCCAAATTCAAGTTTAGTC

       4212 ATACTCGACT


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  36   36  1.00

ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


Consensus pattern (36 bp):   
GTCGAGCTATTAATTGAGCCAAATTCAAGTTTAGTC
Done.