Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00397.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 663

Length: 1105
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33


Found at i:1023 original size:22 final size:22

Alignment explanation


    Indices: 995--1042  Score: 87
    Period size: 22  Copynumber: 2.2  Consensus size: 22

        985 AGTTTTATCA

                    *             
        995 CACAAGTCTTTTTTAACAATTT
          1 CACAAGTCCTTTTTAACAATTT

                                  
       1017 CACAAGTCCTTTTTAACAATTT
          1 CACAAGTCCTTTTTAACAATTT

                
       1039 CACA
          1 CACA

       1043 TTCAAATGAC


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  22   25  1.00

ACGTcount: A:0.33, C:0.23, G:0.04, T:0.40


Consensus pattern (22 bp):   
CACAAGTCCTTTTTAACAATTT
Done.