Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00421.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1977
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.34


Found at i:179 original size:31 final size:31

Alignment explanation


    Indices: 141--204  Score: 128
    Period size: 31  Copynumber: 2.1  Consensus size: 31

        131 GAAATGAAAA

                                           
        141 CTGAATAAAACCATTCATTTATGGATCCTTT
          1 CTGAATAAAACCATTCATTTATGGATCCTTT

                                           
        172 CTGAATAAAACCATTCATTTATGGATCCTTT
          1 CTGAATAAAACCATTCATTTATGGATCCTTT

              
        203 CT
          1 CT

        205 TAAATTTCAA


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   33  1.00

ACGTcount: A:0.31, C:0.20, G:0.09, T:0.39


Consensus pattern (31 bp):   
CTGAATAAAACCATTCATTTATGGATCCTTT
Done.