Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00434.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1946
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29


Found at i:1839 original size:15 final size:16

Alignment explanation


    Indices: 1816--1848  Score: 50
    Period size: 15  Copynumber: 2.1  Consensus size: 16

       1806 CGTTTGGTAC

                *           
       1816 TTCCTCTTGTGG-ATA
          1 TTCCCCTTGTGGAATA

                            
       1831 TTCCCCTTGTGGAATA
          1 TTCCCCTTGTGGAATA

              
       1847 TT
          1 TT

       1849 TTTAAAATAT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  15   11  0.69
  16    5  0.31

ACGTcount: A:0.15, C:0.21, G:0.18, T:0.45


Consensus pattern (16 bp):   
TTCCCCTTGTGGAATA
Done.