Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00452.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1975
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28


Found at i:1786 original size:10 final size:10

Alignment explanation


    Indices: 1771--1820  Score: 66
    Period size: 10  Copynumber: 5.0  Consensus size: 10

       1761 TAATTTTAGG

                      
       1771 ATTTAT-TTT
          1 ATTTATCTTT

                       
       1780 CATTTATCTTT
          1 -ATTTATCTTT

             *        
       1791 AATTATCTTT
          1 ATTTATCTTT

                  *   
       1801 ATTTATTTTT
          1 ATTTATCTTT

                      
       1811 ATTTATCTTT
          1 ATTTATCTTT

       1821 GAGAATTTAA


Statistics
Matches: 35,  Mismatches: 4, Indels: 2
        0.85            0.10        0.05

Matches are distributed among these distances:
  10   32  0.91
  11    3  0.09

ACGTcount: A:0.22, C:0.08, G:0.00, T:0.70


Consensus pattern (10 bp):   
ATTTATCTTT

Done.