Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00459.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2220
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.34


Found at i:500 original size:22 final size:22

Alignment explanation


    Indices: 472--514  Score: 86
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        462 ACATTCCTGC

                                  
        472 GAATCCTGCTGTTAACGTTAAG
          1 GAATCCTGCTGTTAACGTTAAG

                                 
        494 GAATCCTGCTGTTAACGTTAA
          1 GAATCCTGCTGTTAACGTTAA

        515 AGATGATTAA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   21  1.00

ACGTcount: A:0.28, C:0.19, G:0.21, T:0.33


Consensus pattern (22 bp):   
GAATCCTGCTGTTAACGTTAAG
Done.