Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00464.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1986
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31


Found at i:1740 original size:14 final size:14

Alignment explanation


    Indices: 1721--1748  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

       1711 CAATGTCAAT

                          
       1721 GAAAAATAAATAAG
          1 GAAAAATAAATAAG

                          
       1735 GAAAAATAAATAAG
          1 GAAAAATAAATAAG

       1749 ATGAGGGGGA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14


Consensus pattern (14 bp):   
GAAAAATAAATAAG
Done.