Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00476.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 469

Length: 783
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33


Found at i:50 original size:3 final size:3

Alignment explanation


    Indices: 42--74  Score: 57
    Period size: 3  Copynumber: 11.0  Consensus size: 3

         32 TCTCAAACCC

                                             *         
         42 CTT CTT CTT CTT CTT CTT CTT CTT CGT CTT CTT
          1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT

         75 TATCAATTAA


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   28  1.00

ACGTcount: A:0.00, C:0.33, G:0.03, T:0.64


Consensus pattern (3 bp):   
CTT

Done.