Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00480.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 793

Length: 1322
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28


Found at i:277 original size:3 final size:3

Alignment explanation


    Indices: 269--293  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

        259 TTACGGTTGC

                                             
        269 GGT GGT GGT GGT GGT GGT GGT GGT G
          1 GGT GGT GGT GGT GGT GGT GGT GGT G

        294 ATAGCAGTTA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.00, C:0.00, G:0.68, T:0.32


Consensus pattern (3 bp):   
GGT

Done.