Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00491.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 691

Length: 1153
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26


Found at i:307 original size:15 final size:15

Alignment explanation


    Indices: 272--308  Score: 53
    Period size: 12  Copynumber: 2.7  Consensus size: 15

        262 CATATCAAGG

                           
        272 TGGCGGTGGTAAAAA
          1 TGGCGGTGGTAAAAA

                           
        287 ---CGGTGGTAAAAA
          1 TGGCGGTGGTAAAAA

                      
        299 TGGCGGTGGT
          1 TGGCGGTGGT

        309 TTACCTCAGG


Statistics
Matches: 19,  Mismatches: 0, Indels: 6
        0.76            0.00        0.24

Matches are distributed among these distances:
  12   12  0.63
  15    7  0.37

ACGTcount: A:0.27, C:0.08, G:0.43, T:0.22


Consensus pattern (15 bp):   
TGGCGGTGGTAAAAA

Found at i:764 original size:18 final size:18

Alignment explanation


    Indices: 741--778  Score: 58
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        731 TTACATGCCA

                              
        741 CCATACCCATATCAATAT
          1 CCATACCCATATCAATAT

                    *    *    
        759 CCATACCCGTATCCATAT
          1 CCATACCCATATCAATAT

              
        777 CC
          1 CC

        779 CCAACCTCAA


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.32, C:0.39, G:0.03, T:0.26


Consensus pattern (18 bp):   
CCATACCCATATCAATAT
Done.